Loading
PDBj
English日本語简体中文繁體中文한국어
✖
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 814 results
8V7J
DownloadVisualize
BU of 8v7j by Molmil
Human DNA polymerase eta-DNA-araC-ended primer ternary complex:reaction with 20 mM Mg2+ for 600s
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, DNA (5'-D(*AP*GP*CP*GP*TP*CP*A)-R(P*(CAR))-3'), DNA (5'-D(*CP*AP*TP*TP*GP*TP*GP*AP*CP*GP*CP*T)-3'), ...
Authors:Chang, C, Gao, Y.
Deposit date:2023-12-04
Release date:2024-05-15
Last modified:2025-06-04
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Sugar ring alignment and dynamics underline cytarabine and gemcitabine inhibition on Pol eta catalyzed DNA synthesis.
J.Biol.Chem., 300, 2024
8V7F
DownloadVisualize
BU of 8v7f by Molmil
Human DNA polymerase eta-DNA-araC-ended primer-dAMPNPP ternary complex with Mn2+
Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T*())-3'), DNA (5'-D(*CP*AP*TP*GP*AP*TP*GP*AP*CP*GP*CP*T)-3'), ...
Authors:Chang, C, Gao, Y.
Deposit date:2023-12-04
Release date:2024-05-15
Last modified:2025-06-04
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Sugar ring alignment and dynamics underline cytarabine and gemcitabine inhibition on Pol eta catalyzed DNA synthesis.
J.Biol.Chem., 300, 2024
8V7H
DownloadVisualize
BU of 8v7h by Molmil
Human DNA polymerase eta-DNA-araC-ended primer ternary complex:ground state at pH7.0 (K+ MES) with 1 Ca2+ ion
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*AP*GP*CP*GP*TP*CP*A)-R(P*(CAR))-3'), ...
Authors:Chang, C, Gao, Y.
Deposit date:2023-12-04
Release date:2024-05-15
Last modified:2025-06-04
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Sugar ring alignment and dynamics underline cytarabine and gemcitabine inhibition on Pol eta catalyzed DNA synthesis.
J.Biol.Chem., 300, 2024
8V7B
DownloadVisualize
BU of 8v7b by Molmil
Human DNA polymerase eta-DNA-dT primer araCTP insertion ternary complex at pH7.0 (K+ MES) with 1 Ca2+ ion
Descriptor: 4-amino-1-{5-O-[(S)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-D-arabinofuranosyl}pyrimidin-2(1H)-one, CALCIUM ION, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T*())-3'), ...
Authors:Chang, C, Gao, Y.
Deposit date:2023-12-04
Release date:2024-05-15
Last modified:2025-06-04
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Sugar ring alignment and dynamics underline cytarabine and gemcitabine inhibition on Pol eta catalyzed DNA synthesis.
J.Biol.Chem., 300, 2024
8V7D
DownloadVisualize
BU of 8v7d by Molmil
Human DNA polymerase eta-DNA-dT primer rCTP insertion ternary complex at pH7.0 (K+ MES) with 1 Ca2+ ion
Descriptor: CALCIUM ION, CYTIDINE-5'-TRIPHOSPHATE, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T*())-3'), ...
Authors:Chang, C, Gao, Y.
Deposit date:2023-12-04
Release date:2024-05-15
Last modified:2025-06-04
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Sugar ring alignment and dynamics underline cytarabine and gemcitabine inhibition on Pol eta catalyzed DNA synthesis.
J.Biol.Chem., 300, 2024
8V7G
DownloadVisualize
BU of 8v7g by Molmil
Human DNA polymerase eta-DNA-gemC-ended primer-dAMPNPP ternary complex with Mg2+
Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*(U7B))-3'), DNA (5'-D(*CP*AP*TP*TP*GP*TP*GP*AP*CP*GP*CP*T)-3'), ...
Authors:Chang, C, Gao, Y.
Deposit date:2023-12-04
Release date:2024-05-15
Last modified:2025-06-04
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:Sugar ring alignment and dynamics underline cytarabine and gemcitabine inhibition on Pol eta catalyzed DNA synthesis.
J.Biol.Chem., 300, 2024
8VNU
DownloadVisualize
BU of 8vnu by Molmil
Homing endonuclease H98A I-PpoI-DNA complex at pH6.0 (K+ MES) with 70 mM Tl+ for 1800s
Descriptor: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*AP*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, Intron-encoded endonuclease I-PpoI, ...
Authors:Chang, C, Gao, Y.
Deposit date:2024-01-13
Release date:2024-07-17
Last modified:2025-01-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Observing one-divalent-metal-ion-dependent and histidine-promoted His-Me family I-PpoI nuclease catalysis in crystallo.
Elife, 13, 2024
8VMS
DownloadVisualize
BU of 8vms by Molmil
Homing endonuclease I-PpoI-DNA complex:reaction at pH7.0 (K+ MES) with 500 uM Mg2+ for 80s
Descriptor: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*AP*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, Intron-encoded endonuclease I-PpoI, ...
Authors:Chang, C, Gao, Y.
Deposit date:2024-01-13
Release date:2024-07-10
Last modified:2025-01-29
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:Observing one-divalent-metal-ion-dependent and histidine-promoted His-Me family I-PpoI nuclease catalysis in crystallo.
Elife, 13, 2024
8VN3
DownloadVisualize
BU of 8vn3 by Molmil
Homing endonuclease I-PpoI-DNA complex:reaction at pH6.0 (K+ MES) with 500 uM Mg2+ for 600s
Descriptor: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*A)-3'), DNA (5'-D(P*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, ...
Authors:Chang, C, Gao, Y.
Deposit date:2024-01-13
Release date:2024-07-10
Last modified:2025-01-29
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Observing one-divalent-metal-ion-dependent and histidine-promoted His-Me family I-PpoI nuclease catalysis in crystallo.
Elife, 13, 2024
8VND
DownloadVisualize
BU of 8vnd by Molmil
Homing endonuclease I-PpoI-DNA complex:reaction at pH8.0 (Tris) with 500 uM Mg2+ for 600s
Descriptor: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*A)-3'), DNA (5'-D(P*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, ...
Authors:Chang, C, Gao, Y.
Deposit date:2024-01-13
Release date:2024-07-10
Last modified:2025-01-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Observing one-divalent-metal-ion-dependent and histidine-promoted His-Me family I-PpoI nuclease catalysis in crystallo.
Elife, 13, 2024
8VNM
DownloadVisualize
BU of 8vnm by Molmil
Homing endonuclease I-PpoI-DNA complex:reaction at pH6.0 (K+ MES) with 500 uM Mn2+ for 320s
Descriptor: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*AP*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, Intron-encoded endonuclease I-PpoI, ...
Authors:Chang, C, Gao, Y.
Deposit date:2024-01-13
Release date:2024-07-10
Last modified:2025-01-29
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Observing one-divalent-metal-ion-dependent and histidine-promoted His-Me family I-PpoI nuclease catalysis in crystallo.
Elife, 13, 2024
8VMU
DownloadVisualize
BU of 8vmu by Molmil
Homing endonuclease I-PpoI-DNA complex:reaction at pH7.0 (K+ MES) with 500 uM Mg2+ for 320s
Descriptor: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*AP*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, Intron-encoded endonuclease I-PpoI, ...
Authors:Chang, C, Gao, Y.
Deposit date:2024-01-13
Release date:2024-07-10
Last modified:2025-01-29
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:Observing one-divalent-metal-ion-dependent and histidine-promoted His-Me family I-PpoI nuclease catalysis in crystallo.
Elife, 13, 2024
8VN5
DownloadVisualize
BU of 8vn5 by Molmil
Homing endonuclease I-PpoI-DNA complex:ground state at pH8.0 (Tris) with Na+
Descriptor: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*AP*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, Intron-encoded endonuclease I-PpoI, ...
Authors:Chang, C, Gao, Y.
Deposit date:2024-01-13
Release date:2024-07-10
Last modified:2025-01-29
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Observing one-divalent-metal-ion-dependent and histidine-promoted His-Me family I-PpoI nuclease catalysis in crystallo.
Elife, 13, 2024
8VNC
DownloadVisualize
BU of 8vnc by Molmil
Homing endonuclease I-PpoI-DNA complex:reaction at pH8.0 (Tris) with 500 uM Mg2+ for 320s
Descriptor: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*A)-3'), DNA (5'-D(P*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, ...
Authors:Chang, C, Gao, Y.
Deposit date:2024-01-13
Release date:2024-07-10
Last modified:2025-01-29
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Observing one-divalent-metal-ion-dependent and histidine-promoted His-Me family I-PpoI nuclease catalysis in crystallo.
Elife, 13, 2024
8VNP
DownloadVisualize
BU of 8vnp by Molmil
Homing endonuclease I-PpoI-DNA complex at pH6.0 (K+ MES) with 0.2 M sodium malonate
Descriptor: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*AP*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, Intron-encoded endonuclease I-PpoI, ...
Authors:Chang, C, Gao, Y.
Deposit date:2024-01-13
Release date:2024-07-10
Last modified:2025-01-29
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Observing one-divalent-metal-ion-dependent and histidine-promoted His-Me family I-PpoI nuclease catalysis in crystallo.
Elife, 13, 2024
8VMQ
DownloadVisualize
BU of 8vmq by Molmil
Homing endonuclease I-PpoI-DNA complex:reaction at pH7.0 (K+ MES) with 500 uM Mg2+ for 20s
Descriptor: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*AP*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, Intron-encoded endonuclease I-PpoI, ...
Authors:Chang, C, Gao, Y.
Deposit date:2024-01-13
Release date:2024-07-10
Last modified:2025-01-29
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Observing one-divalent-metal-ion-dependent and histidine-promoted His-Me family I-PpoI nuclease catalysis in crystallo.
Elife, 13, 2024
8VN0
DownloadVisualize
BU of 8vn0 by Molmil
Homing endonuclease I-PpoI-DNA complex:reaction at pH6.0 (K+ MES) with 500 uM Mg2+ for 80s
Descriptor: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*AP*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, Intron-encoded endonuclease I-PpoI, ...
Authors:Chang, C, Gao, Y.
Deposit date:2024-01-13
Release date:2024-07-10
Last modified:2025-01-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Observing one-divalent-metal-ion-dependent and histidine-promoted His-Me family I-PpoI nuclease catalysis in crystallo.
Elife, 13, 2024
8VN9
DownloadVisualize
BU of 8vn9 by Molmil
Homing endonuclease I-PpoI-DNA complex:reaction at pH8.0 (Tris) with 500 uM Mg2+ for 80s
Descriptor: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*AP*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, Intron-encoded endonuclease I-PpoI, ...
Authors:Chang, C, Gao, Y.
Deposit date:2024-01-13
Release date:2024-07-10
Last modified:2025-01-29
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Observing one-divalent-metal-ion-dependent and histidine-promoted His-Me family I-PpoI nuclease catalysis in crystallo.
Elife, 13, 2024
8VNN
DownloadVisualize
BU of 8vnn by Molmil
Homing endonuclease I-PpoI-DNA complex:reaction at pH6.0 (K+ MES) with 500 uM Mn2+ for 480s
Descriptor: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*A)-3'), DNA (5'-D(P*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, ...
Authors:Chang, C, Gao, Y.
Deposit date:2024-01-13
Release date:2024-07-10
Last modified:2025-01-29
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Observing one-divalent-metal-ion-dependent and histidine-promoted His-Me family I-PpoI nuclease catalysis in crystallo.
Elife, 13, 2024
8VMP
DownloadVisualize
BU of 8vmp by Molmil
Homing endonuclease I-PpoI-DNA complex:reaction at pH7.0 (K+ MES) with 500 uM Mg2+ for 10s
Descriptor: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*AP*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, Intron-encoded endonuclease I-PpoI, ...
Authors:Chang, C, Gao, Y.
Deposit date:2024-01-13
Release date:2024-07-10
Last modified:2025-01-29
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Observing one-divalent-metal-ion-dependent and histidine-promoted His-Me family I-PpoI nuclease catalysis in crystallo.
Elife, 13, 2024
8VMZ
DownloadVisualize
BU of 8vmz by Molmil
Homing endonuclease I-PpoI-DNA complex:reaction at pH6.0 (K+ MES) with 500 uM Mg2+ for 40s
Descriptor: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*AP*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, Intron-encoded endonuclease I-PpoI, ...
Authors:Chang, C, Gao, Y.
Deposit date:2024-01-13
Release date:2024-07-10
Last modified:2025-01-29
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Observing one-divalent-metal-ion-dependent and histidine-promoted His-Me family I-PpoI nuclease catalysis in crystallo.
Elife, 13, 2024
8VNA
DownloadVisualize
BU of 8vna by Molmil
Homing endonuclease I-PpoI-DNA complex:reaction at pH8.0 (Tris) with 500 uM Mg2+ for 160s
Descriptor: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*AP*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, Intron-encoded endonuclease I-PpoI, ...
Authors:Chang, C, Gao, Y.
Deposit date:2024-01-13
Release date:2024-07-10
Last modified:2025-01-29
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Observing one-divalent-metal-ion-dependent and histidine-promoted His-Me family I-PpoI nuclease catalysis in crystallo.
Elife, 13, 2024
8VNK
DownloadVisualize
BU of 8vnk by Molmil
Homing endonuclease I-PpoI-DNA complex:reaction at pH6.0 (K+ MES) with 500 uM Mn2+ for 160s
Descriptor: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*AP*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, Intron-encoded endonuclease I-PpoI, ...
Authors:Chang, C, Gao, Y.
Deposit date:2024-01-13
Release date:2024-07-10
Last modified:2025-01-29
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:Observing one-divalent-metal-ion-dependent and histidine-promoted His-Me family I-PpoI nuclease catalysis in crystallo.
Elife, 13, 2024
8VN8
DownloadVisualize
BU of 8vn8 by Molmil
Homing endonuclease I-PpoI-DNA complex:reaction at pH8.0 (Tris) with 500 uM Mg2+ for 40s
Descriptor: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*AP*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, Intron-encoded endonuclease I-PpoI, ...
Authors:Chang, C, Gao, Y.
Deposit date:2024-01-13
Release date:2024-07-10
Last modified:2025-01-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Observing one-divalent-metal-ion-dependent and histidine-promoted His-Me family I-PpoI nuclease catalysis in crystallo.
Elife, 13, 2024
8VNJ
DownloadVisualize
BU of 8vnj by Molmil
Homing endonuclease I-PpoI-DNA complex:reaction at pH6.0 (K+ MES) with 500 uM Mn2+ for 120s
Descriptor: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*AP*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, Intron-encoded endonuclease I-PpoI, ...
Authors:Chang, C, Gao, Y.
Deposit date:2024-01-13
Release date:2024-07-10
Last modified:2025-01-29
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:Observing one-divalent-metal-ion-dependent and histidine-promoted His-Me family I-PpoI nuclease catalysis in crystallo.
Elife, 13, 2024

236963

PDB entries from 2025-06-04

PDB statisticsPDBj update infoContact PDBjnumon
OSZAR »