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PDB: 158 results

1B2W
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BU of 1b2w by Molmil
COMPARISON OF THE THREE-DIMENSIONAL STRUCTURES OF A HUMANIZED AND A CHIMERIC FAB OF AN ANTI-GAMMA-INTERFERON ANTIBODY
Descriptor: PROTEIN (ANTIBODY (HEAVY CHAIN)), PROTEIN (ANTIBODY (LIGHT CHAIN))
Authors:Fan, Z, Shan, L, Goldsteen, B.Z, Guddat, L.W, Thakur, A, Landolfi, N.F, Co, M.S, Vasquez, M, Queen, C, Ramsland, P.A, Edmundson, A.B.
Deposit date:1998-12-01
Release date:1999-05-06
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Comparison of the three-dimensional structures of a humanized and a chimeric Fab of an anti-gamma-interferon antibody.
J.Mol.Recog., 12, 1999
1B4J
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BU of 1b4j by Molmil
COMPARISON OF THE THREE-DIMENSIONAL STRUCTURES OF A HUMANIZED AND A CHIMERIC FAB OF AN ANTI-GAMMA-INTERFERON ANTIBODY
Descriptor: ANTIBODY
Authors:Fan, Z, Shan, L, Goldsteen, B.Z, Guddat, L.W, Thakur, A, Landolfi, N.F, Co, M.S, Vasques, M, Queen, C, Ramsland, P.A, Edmundson, A.B.
Deposit date:1998-12-22
Release date:1999-06-15
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Comparison of the three-dimensional structures of a humanized and a chimeric Fab of an anti-gamma-interferon antibody.
J.Mol.Recog., 12, 1999
1IGM
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BU of 1igm by Molmil
THREE DIMENSIONAL STRUCTURE OF AN FV FROM A HUMAN IGM IMMUNOGLOBULIN
Descriptor: IGM-KAPPA POT FV (HEAVY CHAIN), IGM-KAPPA POT FV (LIGHT CHAIN)
Authors:Fan, Z.-C, Guddat, L.W, Edmundson, A.B.
Deposit date:1992-07-10
Release date:1993-10-31
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Three-dimensional structure of an Fv from a human IgM immunoglobulin.
J.Mol.Biol., 228, 1992
9MDW
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BU of 9mdw by Molmil
16mer self-complementary duplex RNA with all Watson-Crick base pairs
Descriptor: 16mer RNA strand with all Watson-Crick base pairs, MAGNESIUM ION
Authors:Fang, Z, Jia, X, Szostak, J.W.
Deposit date:2024-12-05
Release date:2025-05-14
Last modified:2025-05-28
Method:X-RAY DIFFRACTION (1.421 Å)
Cite:Nonenzymatic RNA copying with a potentially primordial genetic alphabet.
Proc.Natl.Acad.Sci.USA, 122, 2025
9MDY
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BU of 9mdy by Molmil
16mer self-complementary duplex RNA with s(2)U:A pair sequence 2
Descriptor: MAGNESIUM ION, RNA strand with s(2)U:A pair sequence 2
Authors:Fang, Z, Jia, X, Szostak, J.W.
Deposit date:2024-12-05
Release date:2025-05-14
Last modified:2025-05-28
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:Nonenzymatic RNA copying with a potentially primordial genetic alphabet.
Proc.Natl.Acad.Sci.USA, 122, 2025
9MDX
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BU of 9mdx by Molmil
16mer self-complementary duplex RNA with s(2)U:A pair sequence 1
Descriptor: RNA strand with s(2)U:A pair sequence 1
Authors:Fang, Z, Jia, X, Szostak, J.W.
Deposit date:2024-12-05
Release date:2025-05-14
Last modified:2025-05-28
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Nonenzymatic RNA copying with a potentially primordial genetic alphabet.
Proc.Natl.Acad.Sci.USA, 122, 2025
8TDY
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BU of 8tdy by Molmil
16mer self-complementary duplex RNA with D:U pair sequence 1
Descriptor: MAGNESIUM ION, RNA
Authors:Fang, Z, Jia, X, Szostak, J.W.
Deposit date:2023-07-05
Release date:2024-06-12
Last modified:2024-06-26
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Diaminopurine in Nonenzymatic RNA Template Copying.
J.Am.Chem.Soc., 146, 2024
8TE2
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BU of 8te2 by Molmil
16mer self-complementary duplex RNA with D:C pair sequence 2
Descriptor: CALCIUM ION, RNA
Authors:Fang, Z, Jia, X, Szostak, J.W.
Deposit date:2023-07-05
Release date:2024-06-12
Last modified:2024-06-26
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Diaminopurine in Nonenzymatic RNA Template Copying.
J.Am.Chem.Soc., 146, 2024
9CSR
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BU of 9csr by Molmil
16mer self-complementary duplex RNA with s(2)C:I pair sequence 2
Descriptor: RNA strand with s(2)C:I pair sequence 2
Authors:Fang, Z, Jia, X, Szostak, J.W.
Deposit date:2024-07-24
Release date:2025-05-14
Last modified:2025-05-28
Method:X-RAY DIFFRACTION (1.33 Å)
Cite:Nonenzymatic RNA copying with a potentially primordial genetic alphabet.
Proc.Natl.Acad.Sci.USA, 122, 2025
9CSQ
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BU of 9csq by Molmil
16mer self-complementary duplex RNA with s(2)C:I pair sequence 1
Descriptor: RNA strand with s(2)C:I pair sequence 1
Authors:Fang, Z, Jia, X, Szostak, J.W.
Deposit date:2024-07-24
Release date:2025-05-14
Last modified:2025-05-28
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Nonenzymatic RNA copying with a potentially primordial genetic alphabet.
Proc.Natl.Acad.Sci.USA, 122, 2025
9CSO
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BU of 9cso by Molmil
16mer self-complementary duplex RNA with s(2)C:G pair sequence 1
Descriptor: RNA strand with s(2)C:G pair sequence 1
Authors:Fang, Z, Jia, X, Szostak, J.W.
Deposit date:2024-07-24
Release date:2025-05-14
Last modified:2025-05-28
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Nonenzymatic RNA copying with a potentially primordial genetic alphabet.
Proc.Natl.Acad.Sci.USA, 122, 2025
5MX8
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BU of 5mx8 by Molmil
Crystal structure of H. pylori purine nucleoside phosphorylase from clinical isolate HpPNP-3
Descriptor: HYPOXANTHINE, PHOSPHATE ION, Purine nucleoside phosphorylase DeoD-type, ...
Authors:Stefanic, Z.
Deposit date:2017-01-21
Release date:2017-04-05
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural characterization of purine nucleoside phosphorylase from human pathogen Helicobacter pylori.
Int. J. Biol. Macromol., 101, 2017
6CC9
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BU of 6cc9 by Molmil
NMR data-driven model of GTPase KRas-GMPPNP:Cmpd2 complex tethered to a nanodisc
Descriptor: (2R,4S)-4-[(5-bromo-1H-indole-3-carbonyl)amino]-2-[(4-chlorophenyl)methyl]piperidin-1-ium, 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, Apolipoprotein A-I, ...
Authors:Fang, Z, Marshall, C.B, Nishikawa, T, Gossert, A.D, Jansen, J.M, Jahnke, W, Ikura, M.
Deposit date:2018-02-06
Release date:2018-09-05
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Inhibition of K-RAS4B by a Unique Mechanism of Action: Stabilizing Membrane-Dependent Occlusion of the Effector-Binding Site.
Cell Chem Biol, 25, 2018
5LU0
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BU of 5lu0 by Molmil
Crystal structure of H. pylori referent strain in complex with PO4
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, PHOSPHATE ION, ...
Authors:Stefanic, Z.
Deposit date:2016-09-07
Release date:2017-09-20
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Helicobacter pylori purine nucleoside phosphorylase shows new distribution patterns of open and closed active site conformations and unusual biochemical features.
FEBS J., 285, 2018
5MX6
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BU of 5mx6 by Molmil
Crystal structure of H. pylori purine nucleoside phosphorylase from clinical isolate HpPNP-2
Descriptor: ACETATE ION, DI(HYDROXYETHYL)ETHER, HYPOXANTHINE, ...
Authors:Stefanic, Z.
Deposit date:2017-01-21
Release date:2017-04-05
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:Structural characterization of purine nucleoside phosphorylase from human pathogen Helicobacter pylori.
Int. J. Biol. Macromol., 101, 2017
8FEO
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BU of 8feo by Molmil
16mer self-complementary duplex RNA with two separated native U:U pairs
Descriptor: MAGNESIUM ION, RNA 16mer, STRONTIUM ION
Authors:Fang, Z, Szostak, J.W.
Deposit date:2022-12-06
Release date:2024-01-24
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:Unusual Base Pair between Two 2-Thiouridines and Its Implication for Nonenzymatic RNA Copying.
J.Am.Chem.Soc., 146, 2024
8FEQ
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BU of 8feq by Molmil
16mer self-complementary duplex RNA with two separated s(2)U:s(2)U pairs
Descriptor: CALCIUM ION, RNA 16mer with two separated s(2)U
Authors:Fang, Z, Zhou, L, Szostak, J.W.
Deposit date:2022-12-06
Release date:2024-01-24
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Unusual Base Pair between Two 2-Thiouridines and Its Implication for Nonenzymatic RNA Copying.
J.Am.Chem.Soc., 146, 2024
8FEP
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BU of 8fep by Molmil
16mer self-complementary duplex RNA with two continuous native U:U pairs
Descriptor: RNA 16mer
Authors:Fang, Z, Szostak, J.W.
Deposit date:2022-12-06
Release date:2024-01-24
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Unusual Base Pair between Two 2-Thiouridines and Its Implication for Nonenzymatic RNA Copying.
J.Am.Chem.Soc., 146, 2024
8TE0
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BU of 8te0 by Molmil
16mer self-complementary duplex RNA with D:C pair sequence 1
Descriptor: MAGNESIUM ION, RNA
Authors:Fang, Z, Jia, X, Szostak, J.W.
Deposit date:2023-07-05
Release date:2024-06-12
Last modified:2024-06-26
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:Diaminopurine in Nonenzymatic RNA Template Copying.
J.Am.Chem.Soc., 146, 2024
8TDZ
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BU of 8tdz by Molmil
16mer self-complementary duplex RNA with D:U pair sequence 2
Descriptor: COBALT HEXAMMINE(III), RNA
Authors:Fang, Z, Jia, X, Szostak, J.W.
Deposit date:2023-07-05
Release date:2024-06-12
Last modified:2024-06-26
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Diaminopurine in Nonenzymatic RNA Template Copying.
J.Am.Chem.Soc., 146, 2024
6PTS
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BU of 6pts by Molmil
NMR data-driven model of KRas-GMPPNP:RBD-CRD complex tethered to a nanodisc (state A)
Descriptor: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, Apolipoprotein A-I, GTPase KRas, ...
Authors:Fang, Z, Lee, K, Gasmi-Seabrook, G, Ikura, M, Marshall, C.B.
Deposit date:2019-07-16
Release date:2020-05-13
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Multivalent assembly of KRAS with the RAS-binding and cysteine-rich domains of CRAF on the membrane.
Proc.Natl.Acad.Sci.USA, 117, 2020
6PTW
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BU of 6ptw by Molmil
NMR data-driven model of KRas-GMPPNP:RBD-CRD complex tethered to a nanodisc (state B)
Descriptor: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, Apolipoprotein A-I, GTPase KRas, ...
Authors:Fang, Z, Lee, K, Gasmi-Seabrook, G, Ikura, M, Marshall, C.B.
Deposit date:2019-07-16
Release date:2020-05-13
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Multivalent assembly of KRAS with the RAS-binding and cysteine-rich domains of CRAF on the membrane.
Proc.Natl.Acad.Sci.USA, 117, 2020
8FER
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BU of 8fer by Molmil
16mer self-complementary duplex RNA with two continuous s(2)U:s(2)U pairs
Descriptor: RNA 16mer with two continuous s(2)U
Authors:Fang, Z, Zhou, L, Szostak, J.W.
Deposit date:2022-12-06
Release date:2024-01-24
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Unusual Base Pair between Two 2-Thiouridines and Its Implication for Nonenzymatic RNA Copying.
J.Am.Chem.Soc., 146, 2024
8VAW
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BU of 8vaw by Molmil
Magnesium catalyzed primer extension product with 14mer primer and mixed phosphorothioate activated G monomer
Descriptor: 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE, MAGNESIUM ION, Magnesium catalyzed nonenzymatic RNA primer extension product
Authors:Fang, Z, Szostak, J.W.
Deposit date:2023-12-11
Release date:2024-04-17
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Catalytic Metal Ion-Substrate Coordination during Nonenzymatic RNA Primer Extension.
J.Am.Chem.Soc., 146, 2024
9CSP
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BU of 9csp by Molmil
16mer self-complementary duplex RNA with s(2)C:G pair sequence 2
Descriptor: MAGNESIUM ION, RNA strand with s(2)C:G pair sequence 2
Authors:Fang, Z, Jia, X, Szostak, J.W.
Deposit date:2024-07-24
Release date:2025-05-14
Last modified:2025-05-28
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Nonenzymatic RNA copying with a potentially primordial genetic alphabet.
Proc.Natl.Acad.Sci.USA, 122, 2025

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