7BPG
 
 | | Structure of serinol nucleic acid - RNA complex | | Descriptor: | CALCIUM ION, RNA (5'-R(*GP*CP*UP*GP*CP*(5BU)P*GP*C)-3'), SNA (S-(F7R)(F7X)(F7O)(F7R)(F7X)(F7O)(F7R)(F7U)-R) | | Authors: | Kamiya, Y, Satoh, T, Kodama, A, Suzuki, T, Uchiyama, S, Kato, K, Asanuma, H. | | Deposit date: | 2020-03-22 | | Release date: | 2020-11-25 | | Last modified: | 2024-03-27 | | Method: | X-RAY DIFFRACTION (1.7 Å) | | Cite: | Intrastrand backbone-nucleobase interactions stabilize unwound right-handed helical structures of heteroduplexes of L-aTNA/RNA and SNA/RNA
Commun Chem, 2020
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7BPF
 | | Structure of L-threoninol nucleic acid - RNA complex | | Descriptor: | L-aTNA (3'-(*GP*CP*AP*GP*CP*AP*GP*C)-1'), RNA (5'-R(*GP*CP*UP*GP*CP*(5BU)P*GP*C)-3') | | Authors: | Kamiya, Y, Satoh, T, Kodama, A, Suzuki, T, Uchiyama, S, Kato, K, Asanuma, H. | | Deposit date: | 2020-03-22 | | Release date: | 2020-11-25 | | Last modified: | 2024-03-27 | | Method: | X-RAY DIFFRACTION (1.75 Å) | | Cite: | Intrastrand backbone-nucleobase interactions stabilize unwound right-handed helical structures of heteroduplexes of L-aTNA/RNA and SNA/RNA
Commun Chem, 2020
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4YGE
 | | Crystal structure of ERGIC-53/MCFD2, trigonal calcium-bound form 2 | | Descriptor: | CALCIUM ION, CHLORIDE ION, Multiple coagulation factor deficiency protein 2, ... | | Authors: | Satoh, T, Nishio, M, Yagi-Utsumi, M, Suzuki, K, Anzai, T, Mizushima, T, Kamiya, Y, Kato, K. | | Deposit date: | 2015-02-26 | | Release date: | 2016-04-06 | | Last modified: | 2024-10-23 | | Method: | X-RAY DIFFRACTION (3.05 Å) | | Cite: | Crystallographic snapshots of the EF-hand protein MCFD2 complexed with the intracellular lectin ERGIC-53 involved in glycoprotein transport.
Acta Crystallogr.,Sect.F, 76, 2020
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4YGB
 | | Crystal structure of ERGIC-53/MCFD2, monoclinic calcium-free form | | Descriptor: | CALCIUM ION, GLYCEROL, Multiple coagulation factor deficiency protein 2, ... | | Authors: | Satoh, T, Nishio, M, Yagi-Utsumi, M, Suzuki, K, Anzai, T, Mizushima, T, Kamiya, Y, Kato, K. | | Deposit date: | 2015-02-26 | | Release date: | 2016-04-06 | | Last modified: | 2024-10-23 | | Method: | X-RAY DIFFRACTION (1.6 Å) | | Cite: | Crystallographic snapshots of the EF-hand protein MCFD2 complexed with the intracellular lectin ERGIC-53 involved in glycoprotein transport.
Acta Crystallogr.,Sect.F, 76, 2020
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9LSC
 | | Crystal structure of mRFP1 with a grafted calcium-binding sequence and two bound calcium ions in a calcium-free solution | | Descriptor: | CALCIUM ION, Red fluorescent protein,grafted calcium-binding sequence | | Authors: | Uehara, R, Kamiya, Y, Maeda, S, Okamoto, K, Toya, S, Chiba, R, Amesaka, H, Takano, K, Matsumura, H, Tanaka, S.-i. | | Deposit date: | 2025-02-04 | | Release date: | 2025-06-04 | | Last modified: | 2025-06-11 | | Method: | X-RAY DIFFRACTION (1.38 Å) | | Cite: | Enhanced secretion through type 1 secretion system by grafting a calcium-binding sequence to modify the folding of cargo proteins.
Protein Sci., 34, 2025
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9LSW
 | | Crystal structure of the calcium-free mRFP1 with a grafted calcium-binding sequence | | Descriptor: | Red fluorescent protein,grafted calcium-binding sequence | | Authors: | Uehara, R, Kamiya, Y, Maeda, S, Okamoto, K, Toya, S, Chiba, R, Amesaka, H, Takano, K, Matsumura, H, Tanaka, S.-i. | | Deposit date: | 2025-02-05 | | Release date: | 2025-06-04 | | Last modified: | 2025-06-11 | | Method: | X-RAY DIFFRACTION (3.16 Å) | | Cite: | Enhanced secretion through type 1 secretion system by grafting a calcium-binding sequence to modify the folding of cargo proteins.
Protein Sci., 34, 2025
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9LSA
 | | Crystal structure of mRFP1 with a grafted calcium-binding sequence and one bound calcium ion in a calcium-containing solution | | Descriptor: | 1,2-ETHANEDIOL, CALCIUM ION, Red fluorescent protein,grafted calcium-binding sequence, ... | | Authors: | Uehara, R, Kamiya, Y, Maeda, S, Okamoto, K, Toya, S, Chiba, R, Amesaka, H, Takano, K, Matsumura, H, Tanaka, S.-i. | | Deposit date: | 2025-02-04 | | Release date: | 2025-06-04 | | Last modified: | 2025-06-11 | | Method: | X-RAY DIFFRACTION (1.62 Å) | | Cite: | Enhanced secretion through type 1 secretion system by grafting a calcium-binding sequence to modify the folding of cargo proteins.
Protein Sci., 34, 2025
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9LSF
 | | Crystal structure of mRFP1 with a grafted calcium-binding sequence and one bound calcium ion in a calcium-free solution | | Descriptor: | 1,2-ETHANEDIOL, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ... | | Authors: | Uehara, R, Kamiya, Y, Maeda, S, Okamoto, K, Toya, S, Chiba, R, Amesaka, H, Takano, K, Matsumura, H, Tanaka, S.-i. | | Deposit date: | 2025-02-04 | | Release date: | 2025-06-04 | | Last modified: | 2025-06-11 | | Method: | X-RAY DIFFRACTION (1.62 Å) | | Cite: | Enhanced secretion through type 1 secretion system by grafting a calcium-binding sequence to modify the folding of cargo proteins.
Protein Sci., 34, 2025
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4YGD
 | | Crystal structure of ERGIC-53/MCFD2, monoclinic calcium-bound form 2 | | Descriptor: | CALCIUM ION, CHLORIDE ION, Multiple coagulation factor deficiency protein 2, ... | | Authors: | Satoh, T, Nishio, M, Yagi-Utsumi, M, Suzuki, K, Anzai, T, Mizushima, T, Kamiya, Y, Kato, K. | | Deposit date: | 2015-02-26 | | Release date: | 2016-04-06 | | Last modified: | 2024-11-20 | | Method: | X-RAY DIFFRACTION (2.51 Å) | | Cite: | Crystallographic snapshots of the EF-hand protein MCFD2 complexed with the intracellular lectin ERGIC-53 involved in glycoprotein transport.
Acta Crystallogr.,Sect.F, 76, 2020
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4YGC
 | | Crystal structure of ERGIC-53/MCFD2, monoclinic calcium-bound form 1 | | Descriptor: | CALCIUM ION, CHLORIDE ION, Multiple coagulation factor deficiency protein 2, ... | | Authors: | Satoh, T, Nishio, M, Yagi-Utsumi, M, Suzuki, K, Anzai, T, Mizushima, T, Kamiya, Y, Kato, K. | | Deposit date: | 2015-02-26 | | Release date: | 2016-04-06 | | Last modified: | 2024-11-06 | | Method: | X-RAY DIFFRACTION (2.4 Å) | | Cite: | Crystallographic snapshots of the EF-hand protein MCFD2 complexed with the intracellular lectin ERGIC-53 involved in glycoprotein transport.
Acta Crystallogr.,Sect.F, 76, 2020
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3A4U
 | | Crystal structure of MCFD2 in complex with carbohydrate recognition domain of ERGIC-53 | | Descriptor: | CALCIUM ION, GLYCEROL, Multiple coagulation factor deficiency protein 2, ... | | Authors: | Nishio, M, Kamiya, Y, Mizushima, T, Wakatsuki, S, Sasakawa, H, Yamamoto, K, Uchiyama, S, Noda, M, McKay, A.R, Fukui, K, Hauri, H.P, Kato, K. | | Deposit date: | 2009-07-17 | | Release date: | 2010-01-05 | | Last modified: | 2024-10-30 | | Method: | X-RAY DIFFRACTION (1.84 Å) | | Cite: | Structural basis for the cooperative interplay between the two causative gene products of combined factor V and factor VIII deficiency.
Proc.Natl.Acad.Sci.USA, 107, 2010
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3VR0
 | | Crystal structure of Pyrococcus furiosus PbaB, an archaeal proteasome activator | | Descriptor: | GOLD ION, Putative uncharacterized protein | | Authors: | Kumoi, K, Satoh, T, Hiromoto, T, Mizushima, T, Kamiya, Y, Noda, M, Uchiyama, S, Murata, K, Yagi, H, Kato, K. | | Deposit date: | 2012-04-02 | | Release date: | 2013-04-03 | | Last modified: | 2024-03-20 | | Method: | X-RAY DIFFRACTION (2.2 Å) | | Cite: | An archaeal homolog of proteasome assembly factor functions as a proteasome activator
Plos One, 8, 2013
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