9NST
 
 | | Bacterial Pictet-Spenglerase KslB in complex with product of L-Trp and a-ketoglutaric acid | | Descriptor: | (1~{S},3~{S})-1-(3-hydroxy-3-oxopropyl)-2,3,4,9-tetrahydropyrido[3,4-b]indole-1,3-dicarboxylic acid, Pictet-Spenglerase | | Authors: | Kim, K, Kim, W. | | Deposit date: | 2025-03-17 | | Release date: | 2025-04-23 | | Last modified: | 2025-05-07 | | Method: | X-RAY DIFFRACTION (3.3 Å) | | Cite: | Structural and mechanistic insights into KslB, a bacterial Pictet-Spenglerase in kitasetaline biosynthesis.
Rsc Chem Biol, 2025
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9NSU
 | | Bacterial Pictet-Spenglerase KslB in complex with product of L-Trp and succinic semialdehyde | | Descriptor: | (1S,3S)-1-(2-carboxyethyl)-2,3,4,9-tetrahydro-1H-pyrido[3,4-b]indole-3-carboxylic acid, Pictet-Spenglerase | | Authors: | Kim, K, Kim, W. | | Deposit date: | 2025-03-17 | | Release date: | 2025-04-23 | | Last modified: | 2025-05-07 | | Method: | X-RAY DIFFRACTION (2.87 Å) | | Cite: | Structural and mechanistic insights into KslB, a bacterial Pictet-Spenglerase in kitasetaline biosynthesis.
Rsc Chem Biol, 2025
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9NS6
 | | KslB apoenzyme | | Descriptor: | Pictet-Spenglerase | | Authors: | Kim, K, Kim, W. | | Deposit date: | 2025-03-16 | | Release date: | 2025-04-23 | | Last modified: | 2025-05-07 | | Method: | X-RAY DIFFRACTION (2.95 Å) | | Cite: | Structural and mechanistic insights into KslB, a bacterial Pictet-Spenglerase in kitasetaline biosynthesis.
Rsc Chem Biol, 2025
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9NSC
 | | Bacterial Pictet-Spenglerase KslB in complex with L-Trp | | Descriptor: | Pictet-Spenglerase, TRYPTOPHAN | | Authors: | Kim, K, Kim, W. | | Deposit date: | 2025-03-16 | | Release date: | 2025-04-23 | | Last modified: | 2025-05-07 | | Method: | X-RAY DIFFRACTION (3.1 Å) | | Cite: | Structural and mechanistic insights into KslB, a bacterial Pictet-Spenglerase in kitasetaline biosynthesis.
Rsc Chem Biol, 2025
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9NSS
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9CSF
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9CSH
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4TX1
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2L4M
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2FI7
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7N4Y
 | | The structure of bovine thyroglobulin with iodinated tyrosines | | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ... | | Authors: | Kim, K, Clarke, O.B. | | Deposit date: | 2021-06-04 | | Release date: | 2021-11-10 | | Last modified: | 2023-11-15 | | Method: | ELECTRON MICROSCOPY (2.61 Å) | | Cite: | The structure of natively iodinated bovine thyroglobulin.
Acta Crystallogr D Struct Biol, 77, 2021
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5EJJ
 | | Crystal structure of UfSP from C.elegans | | Descriptor: | Ufm1-specific protease | | Authors: | Kim, K, Ha, B, Kim, E.E. | | Deposit date: | 2015-11-02 | | Release date: | 2017-01-18 | | Last modified: | 2024-03-20 | | Method: | X-RAY DIFFRACTION (2.8 Å) | | Cite: | The MPN domain of Caenorhabditis elegans UfSP modulates both substrate recognition and deufmylation activity
Biochem. Biophys. Res. Commun., 476, 2016
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2HK1
 | | Crystal structure of D-psicose 3-epimerase (DPEase) in the presence of D-fructose | | Descriptor: | D-PSICOSE 3-EPIMERASE, D-fructose, MANGANESE (II) ION | | Authors: | Kim, K, Kim, H.J, Oh, D.K, Cha, S.S, Rhee, S. | | Deposit date: | 2006-07-03 | | Release date: | 2006-08-29 | | Last modified: | 2024-11-06 | | Method: | X-RAY DIFFRACTION (2.3 Å) | | Cite: | Crystal Structure of d-Psicose 3-epimerase from Agrobacterium tumefaciens and its Complex with True Substrate d-Fructose: A Pivotal Role of Metal in Catalysis, an Active Site for the Non-phosphorylated Substrate, and its Conformational Changes
J.Mol.Biol., 361, 2006
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2HK0
 | | Crystal structure of D-psicose 3-epimerase (DPEase) in the absence of substrate | | Descriptor: | D-PSICOSE 3-EPIMERASE | | Authors: | Kim, K, Kim, H.J, Oh, D.K, Cha, S.S, Rhee, S. | | Deposit date: | 2006-07-03 | | Release date: | 2006-08-29 | | Last modified: | 2024-11-13 | | Method: | X-RAY DIFFRACTION (2 Å) | | Cite: | Crystal Structure of d-Psicose 3-epimerase from Agrobacterium tumefaciens and its Complex with True Substrate d-Fructose: A Pivotal Role of Metal in Catalysis, an Active Site for the Non-phosphorylated Substrate, and its Conformational Changes
J.Mol.Biol., 361, 2006
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3E74
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7YIT
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2Q37
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7CMX
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7CMY
 | | Isocitrate lyase from Bacillus cereus ATCC 14579 in complex with Magnessium ion, glyoxylate, and succinate | | Descriptor: | GLYOXYLIC ACID, Isocitrate lyase, MAGNESIUM ION, ... | | Authors: | Kim, K, Ki, D, Lee, S.H. | | Deposit date: | 2020-07-29 | | Release date: | 2021-08-04 | | Last modified: | 2023-11-29 | | Method: | X-RAY DIFFRACTION (2.5 Å) | | Cite: | Isocitrate lyase from Bacillus cereus ATCC 14579 in complex with Magnessium ion, glyoxylate, and succinate
To Be Published
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2KXX
 | | NMR Structure of Escherichia coli BamE, a Lipoprotein Component of the beta-Barrel Assembly Machinery Complex | | Descriptor: | Small protein A | | Authors: | Kim, K, Okon, M, Escobar, E, Kang, H, McIntosh, L, Paetzel, M. | | Deposit date: | 2010-05-13 | | Release date: | 2011-01-12 | | Last modified: | 2024-05-15 | | Method: | SOLUTION NMR | | Cite: | Structural Characterization of Escherichia coli BamE, a Lipoprotein Component of the beta-Barrel Assembly Machinery Complex.
Biochemistry, 50, 2011
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8IF2
 | | Crystal structure of the receptor binding domain of SARS-CoV-2 Omicron BQ.1.1 variant spike protein in complex with its receptor ACE2 | | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, ... | | Authors: | Kimura, K, Suzuki, T, Hashiguchi, T. | | Deposit date: | 2023-02-17 | | Release date: | 2023-05-17 | | Last modified: | 2024-11-20 | | Method: | X-RAY DIFFRACTION (2.78 Å) | | Cite: | Convergent evolution of SARS-CoV-2 Omicron subvariants leading to the emergence of BQ.1.1 variant.
Nat Commun, 14, 2023
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1V9H
 | | Crystal structure of the RNase MC1 mutant Y101A in complex with 5'-UMP | | Descriptor: | Ribonuclease MC, SULFATE ION, URIDINE-5'-MONOPHOSPHATE | | Authors: | Kimura, K, Numata, T, Kakuta, Y, Kimura, M. | | Deposit date: | 2004-01-26 | | Release date: | 2004-10-05 | | Last modified: | 2024-10-16 | | Method: | X-RAY DIFFRACTION (2 Å) | | Cite: | Amino acids conserved at the C-terminal half of the ribonuclease t2 family contribute to protein stability of the enzymes
Biosci.Biotechnol.Biochem., 68, 2004
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3ACF
 | | Crystal Structure of Carbohydrate-Binding Module Family 28 from Clostridium josui Cel5A in a ligand-free form | | Descriptor: | Beta-1,4-endoglucanase, CALCIUM ION, SULFATE ION | | Authors: | Tsukimoto, K, Takada, R, Araki, Y, Suzuki, K, Karita, S, Wakagi, T, Shoun, H, Watanabe, T, Fushinobu, S. | | Deposit date: | 2010-01-04 | | Release date: | 2010-03-02 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (1.6 Å) | | Cite: | Recognition of cellooligosaccharides by a family 28 carbohydrate-binding module.
Febs Lett., 584, 2010
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3ACG
 | | Crystal Structure of Carbohydrate-Binding Module Family 28 from Clostridium josui Cel5A in complex with cellobiose | | Descriptor: | Beta-1,4-endoglucanase, CALCIUM ION, GLYCEROL, ... | | Authors: | Tsukimoto, K, Takada, R, Araki, Y, Suzuki, K, Karita, S, Wakagi, T, Shoun, H, Watanabe, T, Fushinobu, S. | | Deposit date: | 2010-01-04 | | Release date: | 2010-03-02 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (1.5 Å) | | Cite: | Recognition of cellooligosaccharides by a family 28 carbohydrate-binding module.
Febs Lett., 584, 2010
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3ACH
 | | Crystal Structure of Carbohydrate-Binding Module Family 28 from Clostridium josui Cel5A in complex with cellotetraose | | Descriptor: | Beta-1,4-endoglucanase, CALCIUM ION, PHOSPHATE ION, ... | | Authors: | Tsukimoto, K, Takada, R, Araki, Y, Suzuki, K, Karita, S, Wakagi, T, Shoun, H, Watanabe, T, Fushinobu, S. | | Deposit date: | 2010-01-04 | | Release date: | 2010-03-02 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (1.4 Å) | | Cite: | Recognition of cellooligosaccharides by a family 28 carbohydrate-binding module.
Febs Lett., 584, 2010
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