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PDB: 299 results

9J1C
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BU of 9j1c by Molmil
Structure of ConA/NAP-Man
Descriptor: CALCIUM ION, Concanavalin-A, MANGANESE (II) ION, ...
Authors:Li, L, Chen, G.
Deposit date:2024-08-04
Release date:2024-12-04
Method:X-RAY DIFFRACTION (2.43 Å)
Cite:Structure of ConA/NAP-Man
To Be Published
9J1F
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BU of 9j1f by Molmil
Dimeric Structure of ConA/M2P-Man
Descriptor: CALCIUM ION, Concanavalin-A, MANGANESE (II) ION, ...
Authors:Li, L, Chen, G.
Deposit date:2024-08-04
Release date:2024-12-04
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:Dimeric Structure of ConA/M2P-Man
To Be Published
8W8N
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BU of 8w8n by Molmil
Thermus thermophilus initiation transcription complex in the pre-translocated state
Descriptor: DNA (21-MER), DNA (27-MER), DNA-directed RNA polymerase subunit alpha, ...
Authors:Li, L, Zhang, Y.
Deposit date:2023-09-04
Release date:2024-07-24
Method:X-RAY DIFFRACTION (2.693 Å)
Cite:Nanopore tweezers show fractional-nucleotide translocation in sequence-dependent pausing by RNA polymerase.
Proc.Natl.Acad.Sci.USA, 121, 2024
8W8P
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BU of 8w8p by Molmil
Thermus thermophilus initiation transcription complex containing CMPcPP in the post-translocated state
Descriptor: 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]cytidine, DNA (21-MER), DNA (27-MER), ...
Authors:Li, L, Zhang, Y.
Deposit date:2023-09-04
Release date:2024-07-24
Method:X-RAY DIFFRACTION (3.165 Å)
Cite:Nanopore tweezers show fractional-nucleotide translocation in sequence-dependent pausing by RNA polymerase.
Proc.Natl.Acad.Sci.USA, 121, 2024
8W8O
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BU of 8w8o by Molmil
Thermus thermophilus initiation complex in the half-translocated state
Descriptor: DNA (21-MER), DNA (27-MER), DNA-directed RNA polymerase subunit alpha, ...
Authors:Li, L, Zhang, Y.
Deposit date:2023-09-04
Release date:2024-07-24
Method:X-RAY DIFFRACTION (2.512 Å)
Cite:Nanopore tweezers show fractional-nucleotide translocation in sequence-dependent pausing by RNA polymerase.
Proc.Natl.Acad.Sci.USA, 121, 2024
3KJR
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BU of 3kjr by Molmil
Crystal structure of dihydrofolate reductase/thymidylate synthase from Babesia bovis determined using SlipChip based microfluidics
Descriptor: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, Dihydrofolate reductase/thymidylate synthase, GLYCEROL, ...
Authors:Li, L, Du, W, Edwards, T.E, Staker, B.L, Phan, I, Stacy, R, Ismagilov, R.F, Accelerated Technologies Center for Gene to 3D Structure (ATCG3D), Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2009-11-03
Release date:2009-11-17
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Multiparameter screening on SlipChip used for nanoliter protein crystallization combining free interface diffusion and microbatch methods.
J.Am.Chem.Soc., 132, 2010
3C6E
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BU of 3c6e by Molmil
Crystal structure of the precursor membrane protein- envelope protein heterodimer from the dengue 2 virus at neutral pH
Descriptor: 2-acetamido-2-deoxy-alpha-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope protein E, ...
Authors:Li, L.
Deposit date:2008-02-04
Release date:2008-04-08
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The flavivirus precursor membrane-envelope protein complex: structure and maturation.
Science, 319, 2008
8YF2
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BU of 8yf2 by Molmil
Cryo-EM structure of SARS-CoV-2 prototype RBD in complex with raccoon dog ACE2 (local refinement)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme, ...
Authors:Li, L.J, Luo, C.L, Qi, J.X, Gao, G.F.
Deposit date:2024-02-23
Release date:2024-10-23
Last modified:2025-04-30
Method:ELECTRON MICROSCOPY (2.64 Å)
Cite:Receptor binding and structural basis of raccoon dog ACE2 binding to SARS-CoV-2 prototype and its variants.
Plos Pathog., 20, 2024
8YFT
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BU of 8yft by Molmil
Cryo-EM structure of SARS-CoV-2 alpha variant spike protein in complex with raccoon dog ACE2 (local refinement)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme, ...
Authors:Li, L.J, Luo, C.L, Qi, J.X, Gao, G.F.
Deposit date:2024-02-25
Release date:2024-10-23
Last modified:2025-04-30
Method:ELECTRON MICROSCOPY (3.16 Å)
Cite:Receptor binding and structural basis of raccoon dog ACE2 binding to SARS-CoV-2 prototype and its variants.
Plos Pathog., 20, 2024
3IPZ
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BU of 3ipz by Molmil
Crystal structure of Arabidopsis monothiol glutaredoxin AtGRXcp
Descriptor: Monothiol glutaredoxin-S14, chloroplastic
Authors:Li, L, Cheng, N, Wang, X.
Deposit date:2009-08-18
Release date:2010-06-16
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of Arabidopsis chloroplastic monothiol glutaredoxin AtGRXcp.
Acta Crystallogr.,Sect.D, 66, 2010
7N8T
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BU of 7n8t by Molmil
Crystal Structure of AMP-bound Human JNK2
Descriptor: ADENOSINE MONOPHOSPHATE, HEXAETHYLENE GLYCOL, Mitogen-activated protein kinase 9
Authors:Li, L, Gurbani, D, Westover, K.D.
Deposit date:2021-06-15
Release date:2022-06-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Development of a Covalent Inhibitor of c-Jun N-Terminal Protein Kinase (JNK) 2/3 with Selectivity over JNK1.
J.Med.Chem., 66, 2023
3DAM
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BU of 3dam by Molmil
Crystal Structure of Allene oxide synthase
Descriptor: Cytochrome P450 74A2, PROTOPORPHYRIN IX CONTAINING FE
Authors:Li, L, Wang, X.
Deposit date:2008-05-29
Release date:2008-09-23
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Modes of heme binding and substrate access for cytochrome P450 CYP74A revealed by crystal structures of allene oxide synthase.
Proc.Natl.Acad.Sci.Usa, 105, 2008
3C6D
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BU of 3c6d by Molmil
The pseudo-atomic structure of dengue immature virus
Descriptor: Polyprotein, prM
Authors:Li, L.
Deposit date:2008-02-04
Release date:2008-04-08
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (12.5 Å)
Cite:The flavivirus precursor membrane-envelope protein complex: structure and maturation
Science, 319, 2008
7XB0
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BU of 7xb0 by Molmil
Crystal structure of Omicron BA.2 RBD complexed with hACE2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, ...
Authors:Li, L, Liao, H, Meng, Y, Li, W.
Deposit date:2022-03-19
Release date:2022-07-06
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural basis of human ACE2 higher binding affinity to currently circulating Omicron SARS-CoV-2 sub-variants BA.2 and BA.1.1.
Cell, 185, 2022
3C5X
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BU of 3c5x by Molmil
Crystal structure of the precursor membrane protein- envelope protein heterodimer from the dengue 2 virus at low pH
Descriptor: 2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope protein E, beta-D-mannopyranose-(1-3)-[beta-D-mannopyranose-(1-6)]alpha-D-altropyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Li, L.
Deposit date:2008-02-01
Release date:2008-04-08
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The flavivirus precursor membrane-envelope protein complex: structure and maturation.
Science, 319, 2008
8WP8
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BU of 8wp8 by Molmil
Cryo-EM structure of SARS-CoV-2 Omicron BA.2.86 RBD in complex with human ACE2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, ...
Authors:Li, L.J, Gu, Y.H, Qi, J.X, Gao, G.F.
Deposit date:2023-10-09
Release date:2024-07-03
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (2.89 Å)
Cite:Cryo-EM structure of SARS-CoV-2 Omicron BA.2.86 RBD in complex with human ACE2
To Be Published
8WOY
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BU of 8woy by Molmil
Cryo-EM structure of SARS-CoV-2 Omicron BA.4/5 RBD in complex with rabbit ACE2 (local refinement)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme, Spike protein S1, ...
Authors:Li, L.J, Shi, K.Y, Yu, G.H, Gao, G.F.
Deposit date:2023-10-08
Release date:2023-12-13
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (3.14 Å)
Cite:Structural basis of increased binding affinities of spikes from SARS-CoV-2 Omicron variants to rabbit and hare ACE2s reveals the expanding host tendency.
Mbio, 15, 2024
8WOZ
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BU of 8woz by Molmil
Cryo-EM structure of SARS-CoV RBD in complex with rabbit ACE2
Descriptor: Angiotensin-converting enzyme, Spike protein S1, ZINC ION
Authors:Li, L.J, Shi, K.Y, Yu, G.H, Gao, G.F.
Deposit date:2023-10-08
Release date:2023-12-13
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (3.25 Å)
Cite:Structural basis of increased binding affinities of spikes from SARS-CoV-2 Omicron variants to rabbit and hare ACE2s reveals the expanding host tendency.
Mbio, 15, 2024
8WOX
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BU of 8wox by Molmil
Cryo-EM structure of SARS-CoV-2 prototype RBD in complex with rabbit ACE2 (local refinement)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme, Spike protein S1, ...
Authors:Li, L.J, Shi, K.Y, Yu, G.H, Gao, G.F.
Deposit date:2023-10-08
Release date:2023-12-13
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (2.75 Å)
Cite:Structural basis of increased binding affinities of spikes from SARS-CoV-2 Omicron variants to rabbit and hare ACE2s reveals the expanding host tendency.
Mbio, 15, 2024
3DAN
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BU of 3dan by Molmil
Crystal Structure of Allene oxide synthase
Descriptor: Cytochrome P450 74A2, PROTOPORPHYRIN IX CONTAINING FE
Authors:Li, L, Wang, X.
Deposit date:2008-05-29
Release date:2008-09-23
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Modes of heme binding and substrate access for cytochrome P450 CYP74A revealed by crystal structures of allene oxide synthase.
Proc.Natl.Acad.Sci.Usa, 105, 2008
3DBM
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BU of 3dbm by Molmil
Crystal Structure of Allene oxide synthase
Descriptor: (9E,11E,13S)-13-hydroxyoctadeca-9,11-dienoic acid, Cytochrome P450 74A2, PROTOPORPHYRIN IX CONTAINING FE
Authors:Li, L, Wang, X.
Deposit date:2008-06-01
Release date:2008-09-23
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Modes of heme binding and substrate access for cytochrome P450 CYP74A revealed by crystal structures of allene oxide synthase.
Proc.Natl.Acad.Sci.Usa, 105, 2008
4E5X
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BU of 4e5x by Molmil
Crystal structure of a complex between the human adenovirus type 2 E3-19K protein and MHC class I molecule HLA-A2/Tax
Descriptor: Beta-2-microglobulin, Early E3 18.5 kDa glycoprotein, HLA class I histocompatibility antigen, ...
Authors:Li, L, Bouvier, M.
Deposit date:2012-03-14
Release date:2012-10-10
Last modified:2024-11-27
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of adenovirus E3-19K bound to HLA-A2 reveals mechanism for immunomodulation.
Nat.Struct.Mol.Biol., 19, 2012
5ZX3
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BU of 5zx3 by Molmil
Mycobacterium tuberculosis RNA polymerase holoenzyme with ECF sigma factor sigma H
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Li, L, Zhang, Y.
Deposit date:2018-05-17
Release date:2019-03-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.751 Å)
Cite:Structural basis for transcription initiation by bacterial ECF sigma factors.
Nat Commun, 10, 2019
5ZX2
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BU of 5zx2 by Molmil
Mycobacterium tuberculosis RNA polymerase transcription initiation complex with ECF sigma factor sigma H and 7nt RNA
Descriptor: DNA (47-MER), DNA (48-MER), DNA-directed RNA polymerase subunit alpha, ...
Authors:Li, L, Zhang, Y.
Deposit date:2018-05-17
Release date:2019-03-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural basis for transcription initiation by bacterial ECF sigma factors.
Nat Commun, 10, 2019
5DXY
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BU of 5dxy by Molmil
Crystal structure of Dbr2
Descriptor: Artemisinic aldehyde Delta(11(13)) reductase, FLAVIN MONONUCLEOTIDE, [[(2R,3S,4R,5R)-5-(5-aminocarbonyl-3,4-dihydro-2H-pyridin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-3-oxidanyl-4-phosphonooxy-oxolan-2-yl]methyl hydrogen phosphate
Authors:Li, L, Chen, T.T, Xu, Y.C.
Deposit date:2015-09-24
Release date:2016-10-05
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:The Crystal structure of Dbr2
to be published

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