Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 860 results

7MPR
DownloadVisualize
BU of 7mpr by Molmil
Brucella melitensis NrnC
Descriptor: NanoRNase C, SULFATE ION
Authors:Lormand, J.D, Sondermann, H.
Deposit date:2021-05-04
Release date:2021-09-15
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:Structural characterization of NrnC identifies unifying features of dinucleotidases.
Elife, 10, 2021
9ETK
DownloadVisualize
BU of 9etk by Molmil
Crystal structure of Vibrio cholerae RNase AM
Descriptor: GLYCEROL, MAGNESIUM ION, MANGANESE (II) ION, ...
Authors:Lormand, J.D, Sondermann, H.
Deposit date:2024-03-26
Release date:2024-09-11
Last modified:2025-03-26
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Diribonuclease activity eliminates toxic diribonucleotide accumulation.
Cell Rep, 43, 2024
9FD4
DownloadVisualize
BU of 9fd4 by Molmil
flavin reductase ThdF in complex with two bound FADs in space group P212121
Descriptor: 1,2-ETHANEDIOL, FLAVIN-ADENINE DINUCLEOTIDE, Flavin reductase, ...
Authors:Bork, S, Nagel, M.F, Keller, W, Niemann, H.H.
Deposit date:2024-05-16
Release date:2024-12-25
Last modified:2025-02-05
Method:X-RAY DIFFRACTION (1.14 Å)
Cite:The NADH-dependent flavin reductase ThdF follows an ordered sequential mechanism though crystal structures reveal two FAD molecules in the active site.
J.Biol.Chem., 301, 2024
9FD5
DownloadVisualize
BU of 9fd5 by Molmil
flavin reductase ThdF in complex with two bound FADs in space group P21
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Flavin reductase
Authors:Bork, S, Nagel, M.F, Keller, W, Niemann, H.H.
Deposit date:2024-05-16
Release date:2024-12-25
Last modified:2025-02-05
Method:X-RAY DIFFRACTION (1.31 Å)
Cite:The NADH-dependent flavin reductase ThdF follows an ordered sequential mechanism though crystal structures reveal two FAD molecules in the active site.
J.Biol.Chem., 301, 2024
9FD6
DownloadVisualize
BU of 9fd6 by Molmil
flavin reductase ThdF in complex with NAD and FAD
Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, FLAVIN-ADENINE DINUCLEOTIDE, Flavin reductase
Authors:Bork, S, Nagel, M.F, Keller, W, Niemann, H.H.
Deposit date:2024-05-16
Release date:2024-12-25
Last modified:2025-02-05
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:The NADH-dependent flavin reductase ThdF follows an ordered sequential mechanism though crystal structures reveal two FAD molecules in the active site.
J.Biol.Chem., 301, 2024
9F7M
DownloadVisualize
BU of 9f7m by Molmil
Blastococcus Orn bound to pGG
Descriptor: Oligoribonuclease, RNA (5'-R(P*GP*G)-3'), SODIUM ION
Authors:Mortensen, S, Sondermann, H.
Deposit date:2024-05-04
Release date:2024-12-04
Last modified:2025-04-09
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural and bioinformatics analyses identify deoxydinucleotide-specific nucleases and their association with genomic islands in gram-positive bacteria.
Nucleic Acids Res., 53, 2025
4X31
DownloadVisualize
BU of 4x31 by Molmil
Room temperature structure of bacteriorhodopsin from lipidic cubic phase obtained with serial millisecond crystallography using synchrotron radiation
Descriptor: 1-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL, Bacteriorhodopsin, RETINAL
Authors:Nogly, P, James, D, Wang, D, White, T, Zatsepin, N, Shilova, A, Nelson, G, Liu, H, Johansson, L, Heymann, M, Jaeger, K, Metz, M, Wickstrand, C, Wu, W, Baath, P, Berntsen, P, Oberthuer, D, Panneels, V, Cherezov, V, Chapman, H, Spence, J, Schertler, G, Neutze, R, Moraes, I, Burghammer, M, Standfuss, J, Weierstall, U.
Deposit date:2014-11-27
Release date:2015-02-18
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Lipidic cubic phase serial millisecond crystallography using synchrotron radiation.
Iucrj, 2, 2015
9F7L
DownloadVisualize
BU of 9f7l by Molmil
Bartonella henselae NrnC bound to deoxy-pGG
Descriptor: 3'-5' exonuclease, CHLORIDE ION, DNA (5'-R(P*DGP*DG)-3'), ...
Authors:Mortensen, S, Sondermann, H.
Deposit date:2024-05-04
Release date:2024-12-04
Last modified:2025-04-09
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural and bioinformatics analyses identify deoxydinucleotide-specific nucleases and their association with genomic islands in gram-positive bacteria.
Nucleic Acids Res., 53, 2025
6QD5
DownloadVisualize
BU of 6qd5 by Molmil
X-ray Structure of the Human Urea Channel SLC14A1/UT1
Descriptor: CHOLESTEROL HEMISUCCINATE, TETRAETHYLENE GLYCOL, Urea transporter 1, ...
Authors:Dietz, L, Chi, G, Pike, A.C.W, Moreau, C, Man, H, Snee, M, Scacioc, A, Shrestha, L, Mukhopadhyay, S.M.M, Mckinley, G, Ellis, K, Kliszcak, M, Chalk, R, Borkowska, O, Burgess-Brown, N.A, von Delft, F, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Durr, K.L, Structural Genomics Consortium (SGC)
Deposit date:2018-12-31
Release date:2019-01-09
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.398 Å)
Cite:X-ray Structure of the Human Urea Channel SLC14A1/UT1
To Be Published
9F7G
DownloadVisualize
BU of 9f7g by Molmil
Nocardioides diDNase bound to deoxy-pGG
Descriptor: DNA (5'-D(P*GP*G)-3'), Ribonuclease D, SULFATE ION
Authors:Mortensen, S, Sondermann, H.
Deposit date:2024-05-03
Release date:2024-12-04
Last modified:2025-04-09
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structural and bioinformatics analyses identify deoxydinucleotide-specific nucleases and their association with genomic islands in gram-positive bacteria.
Nucleic Acids Res., 53, 2025
9F7J
DownloadVisualize
BU of 9f7j by Molmil
Rhodococcus diDNase in apo state
Descriptor: diDNase
Authors:Mortensen, S, Sondermann, H.
Deposit date:2024-05-03
Release date:2024-12-04
Last modified:2025-04-09
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Structural and bioinformatics analyses identify deoxydinucleotide-specific nucleases and their association with genomic islands in gram-positive bacteria.
Nucleic Acids Res., 53, 2025
9F7D
DownloadVisualize
BU of 9f7d by Molmil
Rhodococcus diDNase bound to deoxy-pGG
Descriptor: CHLORIDE ION, DNA (5'-D(P*GP*G)-3'), diDNase
Authors:Mortensen, S, Sondermann, H.
Deposit date:2024-05-03
Release date:2024-12-04
Last modified:2025-04-09
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural and bioinformatics analyses identify deoxydinucleotide-specific nucleases and their association with genomic islands in gram-positive bacteria.
Nucleic Acids Res., 53, 2025
4WCZ
DownloadVisualize
BU of 4wcz by Molmil
Crystal structure of a putative enoyl-CoA hydratase/isomerase from Novosphingobium aromaticivorans
Descriptor: Enoyl-CoA hydratase/isomerase
Authors:Tkaczuk, K.L, Cooper, D.R, Chapman, H.C, Niedzialkowska, E, Cymborowski, M.T, Hillerich, B.S, Stead, M, Ahmed, M, Hammonds, J, Bonanno, J, Seidel, R, Almo, S.C, Minor, W, New York Structural Genomics Research Consortium (NYSGRC)
Deposit date:2014-09-05
Release date:2014-12-03
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Crystal structure of a putative enoyl-CoA hydratase/isomerase from Novosphingobium aromaticivorans
to be published
4CY8
DownloadVisualize
BU of 4cy8 by Molmil
2-hydroxybiphenyl 3-monooxygenase (HbpA) in complex with FAD
Descriptor: 2-HYDROXYBIPHENYL 3-MONOOXYGENASE, DIHYDROFLAVINE-ADENINE DINUCLEOTIDE
Authors:Jensen, C.N, Farrugia, J.E, Frank, A, Man, H, Hart, S, Turkenburg, J.P, Grogan, G.
Deposit date:2014-04-10
Release date:2015-03-18
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Structures of the Apo and Fad-Bound Forms of 2-Hydroxybiphenyl 3-Monooxygenase (Hbpa) Locate Activity Hotspots Identified by Using Directed Evolution.
Chembiochem, 16, 2015
4CY6
DownloadVisualize
BU of 4cy6 by Molmil
apo structure of 2-hydroxybiphenyl 3-monooxygenase HbpA
Descriptor: 2-HYDROXYBIPHENYL-3-MONOOXYGENASE
Authors:Jensen, C.N, Farrugia, J.E, Frank, A, Man, H, Hart, S, Turkenburg, J.P, Grogan, G.
Deposit date:2014-04-10
Release date:2015-03-18
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.76 Å)
Cite:Structures of the Apo and Fad-Bound Forms of 2-Hydroxybiphenyl 3-Monooxygenase (Hbpa) Locate Activity Hotspots Identified by Using Directed Evolution.
Chembiochem, 16, 2015
5G1W
DownloadVisualize
BU of 5g1w by Molmil
Apo Structure of Linalool Dehydratase-Isomerase
Descriptor: 1,2-ETHANEDIOL, LINALOOL DEHYDRATASE/ISOMERASE, METHYLMALONIC ACID
Authors:Chambers, S, Hau, A, Man, H, Omar, M, Turkenburg, J.P, Grogan, G.
Deposit date:2016-03-30
Release date:2017-01-11
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Structural and functional insights into asymmetric enzymatic dehydration of alkenols.
Nat. Chem. Biol., 13, 2017
5G1U
DownloadVisualize
BU of 5g1u by Molmil
Linalool Dehydratase Isomerase in complex with Geraniol
Descriptor: Geraniol, LINALOOL DEHYDRATASE/ISOMERASE
Authors:Chambers, S, Hau, A, Man, H, Omar, M, Turkenburg, J.P, Grogan, G.
Deposit date:2016-03-30
Release date:2017-01-11
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.57 Å)
Cite:Structural and functional insights into asymmetric enzymatic dehydration of alkenols.
Nat. Chem. Biol., 13, 2017
5G1V
DownloadVisualize
BU of 5g1v by Molmil
Linalool Dehydratase Isomerase: Selenomethionine Derivative
Descriptor: LINALOOL DEHYDRATASE ISOMERASE
Authors:Chambers, S, Hau, A, Man, H, Omar, M, Turkenburg, J.P, Grogan, G.
Deposit date:2016-03-30
Release date:2017-01-11
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.68 Å)
Cite:Structural and functional insights into asymmetric enzymatic dehydration of alkenols.
Nat. Chem. Biol., 13, 2017
5XFC
DownloadVisualize
BU of 5xfc by Molmil
Serial femtosecond X-ray structure of a stem domain of human O-mannose beta-1,2-N-acetylglucosaminyltransferase solved by Se-SAD using XFEL (refined against 13,000 patterns)
Descriptor: 4-nitrophenyl beta-D-mannopyranoside, Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1
Authors:Kuwabara, N, Fumiaki, Y, Kato, R, Manya, H.
Deposit date:2017-04-10
Release date:2017-08-30
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Experimental phase determination with selenomethionine or mercury-derivatization in serial femtosecond crystallography
IUCrJ, 4, 2017
1Z6J
DownloadVisualize
BU of 1z6j by Molmil
Crystal Structure of a ternary complex of Factor VIIa/Tissue Factor/Pyrazinone Inhibitor
Descriptor: 5-[AMINO(IMINO)METHYL]-2-[({[6-[3-AMINO-5-({[(1R)-1-METHYLPROPYL]AMINO}CARBONYL)PHENYL]-3-(ISOPROPYLAMINO)-2-OXOPYRAZIN-1(2H)-YL]ACETYL}AMINO)METHYL]-N-PYRIDIN-4-YLBENZAMIDE, CALCIUM ION, Coagulation factor VII, ...
Authors:Schweitzer, B.A, Neumann, W.L, Rahman, H.K, Kusturin, C.L, Sample, K.R, Poda, G.I, Kurumbail, R.G, Stevens, A.M, Stegeman, R.A, Stallings, W.C.
Deposit date:2005-03-22
Release date:2005-05-03
Last modified:2025-03-26
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure-based design and synthesis of pyrazinones containing novel P1 'side pocket' moieties as inhibitors of TF/VIIa.
Bioorg.Med.Chem.Lett., 15, 2005
1GK4
DownloadVisualize
BU of 1gk4 by Molmil
HUMAN VIMENTIN COIL 2B FRAGMENT (CYS2)
Descriptor: ACETATE ION, VIMENTIN
Authors:Strelkov, S.V, Herrmann, H, Geisler, N, Zimbelmann, R, Aebi, U, Burkhard, P.
Deposit date:2001-08-08
Release date:2002-03-15
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Conserved Segments 1A and 2B of the Intermediate Filament Dimer: Their Atomic Structures and Role in Filament Assembly.
Embo J., 21, 2002
4RVY
DownloadVisualize
BU of 4rvy by Molmil
Serial Time resolved crystallography of Photosystem II using a femtosecond X-ray laser. The S state after two flashes (S3)
Descriptor: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ...
Authors:Kupitz, C, Basu, S, Grotjohann, I, Fromme, R, Zatsepin, N, Rendek, K.N, Hunter, M, Shoeman, R.L, White, T.A, Wang, D, James, D, Yang, J.-H, Cobb, D.E, Reeder, B, Sierra, R.G, Liu, H, Barty, A, Aquila, A, Deponte, D, Kirian, R, Bari, S, Bergkamp, J.J, Beyerlein, K, Bogan, M.J, Caleman, C, Chao, T.-C, Conrad, C.E, Davis, K.M, Fleckenstein, H, Galli, L, Hau-Riege, S.P, Kassemeyer, S, Laksmono, H, Liang, M, Lomb, L, Marchesini, S, Martin, A.V, Messerschmidt, M, Milathianaki, D, Nass, K, Ros, A, Roy-Chowdhury, S, Schmidt, K, Seibert, M, Steinbrener, J, Stellato, F, Yan, L, Yoon, C, Moore, T.A, Moore, A.L, Pushkar, Y, Williams, G.J, Boutet, S, Doak, R.B, Weierstall, U, Frank, M, Chapman, H.N, Spence, J.C.H, Fromme, P.
Deposit date:2014-11-29
Release date:2015-11-04
Last modified:2024-11-27
Method:X-RAY DIFFRACTION (5.5 Å)
Cite:Serial time-resolved crystallography of photosystem II using a femtosecond X-ray laser.
Nature, 513, 2014
1XCK
DownloadVisualize
BU of 1xck by Molmil
Crystal structure of apo GroEL
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 60 kDa chaperonin, DI(HYDROXYETHYL)ETHER, ...
Authors:Bartolucci, C, Lamba, D, Grazulis, S, Manakova, E, Heumann, H.
Deposit date:2004-09-02
Release date:2005-10-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.92 Å)
Cite:Crystal structure of wild-type chaperonin GroEL
J.Mol.Biol., 354, 2005
1G3U
DownloadVisualize
BU of 1g3u by Molmil
CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS THYMIDYLATE KINASE COMPLEXED WITH THYMIDINE MONOPHOSPHATE (TMP)
Descriptor: MAGNESIUM ION, SULFATE ION, THYMIDINE-5'-PHOSPHATE, ...
Authors:Li de la Sierra, I, Munier-Lehmann, H, Gilles, A.M, Barzu, O, Delarue, M.
Deposit date:2000-10-25
Release date:2001-10-25
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:X-ray structure of TMP kinase from Mycobacterium tuberculosis complexed with TMP at 1.95 A resolution.
J.Mol.Biol., 311, 2001
1GK6
DownloadVisualize
BU of 1gk6 by Molmil
Human vimentin coil 2B fragment linked to GCN4 leucine zipper (Z2B)
Descriptor: VIMENTIN
Authors:Strelkov, S.V, Herrmann, H, Geisler, N, Zimbelmann, R, Aebi, U, Burkhard, P.
Deposit date:2001-08-08
Release date:2002-03-15
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Conserved Segments 1A and 2B of the Intermediate Filament Dimer: Their Atomic Structures and Role in Filament Assembly.
Embo J., 21, 2002

238268

PDB entries from 2025-07-02

PDB statisticsPDBj update infoContact PDBjnumon
OSZAR »