1YR9
PAB0955 crystal structure : a GTPase in GDP and PO4 bound form from Pyrococcus abyssi
Summary for 1YR9
| Entry DOI | 10.2210/pdb1yr9/pdb |
| Related | 1YR6 1YR7 1YR8 1YRA 1YRB |
| Descriptor | ATP(GTP)binding protein, PHOSPHATE ION, GUANOSINE-5'-DIPHOSPHATE, ... (4 entities in total) |
| Functional Keywords | gtp binding protein, gtpase, p-loop, rossmann fold, gdp, hydrolase |
| Biological source | Pyrococcus abyssi |
| Total number of polymer chains | 1 |
| Total formula weight | 30872.97 |
| Authors | Gras, S.,Carpentier, P.,Armengaud, J.,Housset, D. (deposition date: 2005-02-03, release date: 2006-02-14, Last modification date: 2024-11-13) |
| Primary citation | Gras, S.,Chaumont, V.,Fernandez, B.,Carpentier, P.,Charrier-Savournin, F.,Schmitt, S.,Pineau, C.,Flament, D.,Hecker, A.,Forterre, P.,Armengaud, J.,Housset, D. Structural insights into a new homodimeric self-activated GTPase family. Embo Rep., 8:569-575, 2007 Cited by PubMed Abstract: The human XAB1/MBDin GTPase and its close homologues form one of the ten phylogenetically distinct families of the SIMIBI (after signal recognition particle, MinD and BioD) class of phosphate-binding loop NTPases. The genomic context and the partners identified for the archaeal and eukaryotic homologues indicate that they are involved in genome maintenance--DNA repair or replication. The crystal structure of PAB0955 from Pyrococcus abyssi shows that, unlike other SIMIBI class G proteins, these highly conserved GTPases are homodimeric, regardless of the presence of nucleotides. The nucleotide-binding site of PAB0955 is rather rigid and its conformation is closest to that of the activated SRP G domain. One insertion to the G domain bears a strictly conserved GPN motif, which is part of the catalytic site of the other monomer and stabilizes the phosphate ion formed. Owing to this unique functional feature, we propose to call this family as GPN-loop GTPase. PubMed: 17468740DOI: 10.1038/sj.embor.7400958 PDB entries with the same primary citation |
| Experimental method | X-RAY DIFFRACTION (2.8 Å) |
Structure validation
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