4HTK
Mitigation of X-ray damage in macromolecular crystallography by submicrometer line focusing; total dose 2.17 x 10e+12 X-ray photons
Summary for 4HTK
Entry DOI | 10.2210/pdb4htk/pdb |
Related | 4HTN 4HTQ |
Descriptor | Lysozyme C, CHLORIDE ION, SODIUM ION, ... (5 entities in total) |
Functional Keywords | hydrolase, o-glycosyl, glycosidase, cytoplasm (white) |
Biological source | Gallus gallus (bantam,chickens) |
Cellular location | Secreted: P00698 |
Total number of polymer chains | 1 |
Total formula weight | 14823.98 |
Authors | Duke, N.E.C.,Finfrock, Y.Z.,Stern, E.A.,Alkire, R.W.,Lazarski, K.,Joachimiak, A. (deposition date: 2012-11-01, release date: 2013-05-15, Last modification date: 2024-11-06) |
Primary citation | Finfrock, Y.Z.,Stern, E.A.,Alkire, R.W.,Kas, J.J.,Evans-Lutterodt, K.,Stein, A.,Duke, N.,Lazarski, K.,Joachimiak, A. Mitigation of X-ray damage in macromolecular crystallography by submicrometre line focusing. Acta Crystallogr.,Sect.D, 69:1463-1469, 2013 Cited by PubMed Abstract: Reported here are measurements of the penetration depth and spatial distribution of photoelectron (PE) damage excited by 18.6 keV X-ray photons in a lysozyme crystal with a vertical submicrometre line-focus beam of 0.7 µm full-width half-maximum (FWHM). The experimental results determined that the penetration depth of PEs is 5 ± 0.5 µm with a monotonically decreasing spatial distribution shape, resulting in mitigation of diffraction signal damage. This does not agree with previous theoretical predication that the mitigation of damage requires a peak of damage outside the focus. A new improved calculation provides some qualitative agreement with the experimental results, but significant errors still remain. The mitigation of radiation damage by line focusing was measured experimentally by comparing the damage in the X-ray-irradiated regions of the submicrometre focus with the large-beam case under conditions of equal exposure and equal volumes of the protein crystal, and a mitigation factor of 4.4 ± 0.4 was determined. The mitigation of radiation damage is caused by spatial separation of the dominant PE radiation-damage component from the crystal region of the line-focus beam that contributes the diffraction signal. The diffraction signal is generated by coherent scattering of incident X-rays (which introduces no damage), while the overwhelming proportion of damage is caused by PE emission as X-ray photons are absorbed. PubMed: 23897469DOI: 10.1107/S0907444913009335 PDB entries with the same primary citation |
Experimental method | X-RAY DIFFRACTION (1.2 Å) |
Structure validation
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