6JPD
Mouse receptor-interacting protein kinase 3 (RIP3) amyloid structure by solid-state NMR
Summary for 6JPD
Entry DOI | 10.2210/pdb6jpd/pdb |
NMR Information | BMRB: 36243 |
Descriptor | Receptor-interacting serine/threonine-protein kinase 3 (1 entity in total) |
Functional Keywords | programmed necrosis, amyloid, protein fibril |
Biological source | Mus musculus (Mouse) |
Total number of polymer chains | 5 |
Total formula weight | 47271.79 |
Authors | Wu, X.L.,Hu, H.,Zhang, J.,Dong, X.Q.,Wang, J.,Schwieters, C.,Wang, H.Y.,Lu, J.X. (deposition date: 2019-03-26, release date: 2020-10-28, Last modification date: 2024-05-15) |
Primary citation | Wu, X.L.,Hu, H.,Dong, X.Q.,Zhang, J.,Wang, J.,Schwieters, C.D.,Liu, J.,Wu, G.X.,Li, B.,Lin, J.Y.,Wang, H.Y.,Lu, J.X. The amyloid structure of mouse RIPK3 (receptor interacting protein kinase 3) in cell necroptosis. Nat Commun, 12:1627-1627, 2021 Cited by PubMed Abstract: RIPK3 amyloid complex plays crucial roles during TNF-induced necroptosis and in response to immune defense in both human and mouse. Here, we have structurally characterized mouse RIPK3 homogeneous self-assembly using solid-state NMR, revealing a well-ordered N-shaped amyloid core structure featured with 3 parallel in-register β-sheets. This structure differs from previously published human RIPK1/RIPK3 hetero-amyloid complex structure, which adopted a serpentine fold. Functional studies indicate both RIPK1-RIPK3 binding and RIPK3 amyloid formation are essential but not sufficient for TNF-induced necroptosis. The structural integrity of RIPK3 fibril with three β-strands is necessary for signaling. Molecular dynamics simulations with a mouse RIPK1/RIPK3 model indicate that the hetero-amyloid is less stable when adopting the RIPK3 fibril conformation, suggesting a structural transformation of RIPK3 from RIPK1-RIPK3 binding to RIPK3 amyloid formation. This structural transformation would provide the missing link connecting RIPK1-RIPK3 binding to RIPK3 homo-oligomer formation in the signal transduction. PubMed: 33712586DOI: 10.1038/s41467-021-21881-2 PDB entries with the same primary citation |
Experimental method | SOLID-STATE NMR |
Structure validation
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