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6JPD

Mouse receptor-interacting protein kinase 3 (RIP3) amyloid structure by solid-state NMR

Summary for 6JPD
Entry DOI10.2210/pdb6jpd/pdb
NMR InformationBMRB: 36243
DescriptorReceptor-interacting serine/threonine-protein kinase 3 (1 entity in total)
Functional Keywordsprogrammed necrosis, amyloid, protein fibril
Biological sourceMus musculus (Mouse)
Total number of polymer chains5
Total formula weight47271.79
Authors
Wu, X.L.,Hu, H.,Zhang, J.,Dong, X.Q.,Wang, J.,Schwieters, C.,Wang, H.Y.,Lu, J.X. (deposition date: 2019-03-26, release date: 2020-10-28, Last modification date: 2024-05-15)
Primary citationWu, X.L.,Hu, H.,Dong, X.Q.,Zhang, J.,Wang, J.,Schwieters, C.D.,Liu, J.,Wu, G.X.,Li, B.,Lin, J.Y.,Wang, H.Y.,Lu, J.X.
The amyloid structure of mouse RIPK3 (receptor interacting protein kinase 3) in cell necroptosis.
Nat Commun, 12:1627-1627, 2021
Cited by
PubMed Abstract: RIPK3 amyloid complex plays crucial roles during TNF-induced necroptosis and in response to immune defense in both human and mouse. Here, we have structurally characterized mouse RIPK3 homogeneous self-assembly using solid-state NMR, revealing a well-ordered N-shaped amyloid core structure featured with 3 parallel in-register β-sheets. This structure differs from previously published human RIPK1/RIPK3 hetero-amyloid complex structure, which adopted a serpentine fold. Functional studies indicate both RIPK1-RIPK3 binding and RIPK3 amyloid formation are essential but not sufficient for TNF-induced necroptosis. The structural integrity of RIPK3 fibril with three β-strands is necessary for signaling. Molecular dynamics simulations with a mouse RIPK1/RIPK3 model indicate that the hetero-amyloid is less stable when adopting the RIPK3 fibril conformation, suggesting a structural transformation of RIPK3 from RIPK1-RIPK3 binding to RIPK3 amyloid formation. This structural transformation would provide the missing link connecting RIPK1-RIPK3 binding to RIPK3 homo-oligomer formation in the signal transduction.
PubMed: 33712586
DOI: 10.1038/s41467-021-21881-2
PDB entries with the same primary citation
Experimental method
SOLID-STATE NMR
Structure validation

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